STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0287PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vpa:VP1995 ABC transporter, ATP-binding protein. (240 aa)    
Predicted Functional Partners:
Apre_0289
PFAM: protein of unknown function DUF214; KEGG: bha:BH3121 hypothetical protein.
 
 0.991
Apre_0774
PFAM: protein of unknown function DUF214; KEGG: lpc:LPC_0234 hypothetical protein.
  
 
 0.983
Apre_0288
Hypothetical protein.
 
    0.839
Apre_0286
PFAM: Methicillin resistance protein; KEGG: sat:SYN_01477 pentaglycine interpeptide bridge formation protein.
       0.782
Apre_0687
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bra:BRADO0891 peptide ABC transporter ATP- binding protein.
 
    
0.750
Apre_0478
PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: pla:Plav_1100 ABC transporter related.
 
 
0.638
Apre_0744
PFAM: protein of unknown function DUF214; KEGG: bcy:Bcer98_2177 hypothetical protein.
  
 
 0.631
Apre_1090
PFAM: protein of unknown function DUF214; KEGG: bca:BCE_4984 ABC transporter, permease protein.
  
 
 0.631
Apre_0290
Hypothetical protein.
     
 0.585
rlmH
Protein of unknown function DUF163; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
  
    0.572
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.