STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0298PFAM: inner-membrane translocator; KEGG: bsu:BSU31570 hypothetical protein; Belongs to the binding-protein-dependent transport system permease family. (312 aa)    
Predicted Functional Partners:
Apre_0297
PFAM: inner-membrane translocator; KEGG: bcb:BCB4264_A3888 sugar ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
0.998
Apre_0296
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcy:Bcer98_2442 ABC transporter-related protein.
 
 0.997
Apre_0295
PFAM: basic membrane lipoprotein; KEGG: bcb:BCB4264_A3890 nucleoside-binding protein.
 
 
 0.989
Apre_0299
KEGG: hypothetical protein.
       0.621
Apre_1620
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bsu:BSU35940 ribose ABC transporter ATP- binding protein.
     0.525
Apre_0300
PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: hypothetical protein; K01620 threonine aldolase.
       0.427
Apre_0301
KEGG: hypothetical protein.
       0.427
Apre_0302
PFAM: acyltransferase 3; KEGG: bsu:BSU27140 hypothetical protein.
       0.427
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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