STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0299KEGG: hypothetical protein. (468 aa)    
Predicted Functional Partners:
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.776
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.764
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.749
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 
 0.639
Apre_0296
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcy:Bcer98_2442 ABC transporter-related protein.
       0.616
Apre_0297
PFAM: inner-membrane translocator; KEGG: bcb:BCB4264_A3888 sugar ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.616
Apre_0298
PFAM: inner-membrane translocator; KEGG: bsu:BSU31570 hypothetical protein; Belongs to the binding-protein-dependent transport system permease family.
       0.616
Apre_0302
PFAM: acyltransferase 3; KEGG: bsu:BSU27140 hypothetical protein.
  
  
 0.551
Apre_0300
PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: hypothetical protein; K01620 threonine aldolase.
       0.529
Apre_0301
KEGG: hypothetical protein.
       0.529
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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