STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0302PFAM: acyltransferase 3; KEGG: bsu:BSU27140 hypothetical protein. (592 aa)    
Predicted Functional Partners:
Apre_0301
KEGG: hypothetical protein.
       0.788
Apre_0300
PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: hypothetical protein; K01620 threonine aldolase.
  
    0.784
Apre_0897
KEGG: hypothetical protein.
 
     0.580
Apre_0299
KEGG: hypothetical protein.
  
  
 0.556
Apre_0167
Hypothetical protein.
  
     0.510
Apre_0306
PFAM: major facilitator superfamily MFS_1; KEGG: cjj:CJJ81176_1679 major facilitator superfamily protein.
  
    0.476
Apre_0013
PFAM: peptidoglycan hydrolase; KEGG: hypothetical protein.
  
     0.440
Apre_0187
PFAM: peptidase S41; KEGG: similar to Interphotoreceptor retinoid- binding protein precursor (IRBP) (Interstitial retinol-binding protein).
  
     0.427
Apre_0296
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcy:Bcer98_2442 ABC transporter-related protein.
       0.427
Apre_0297
PFAM: inner-membrane translocator; KEGG: bcb:BCB4264_A3888 sugar ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.427
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.