STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0309PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: Os08g0557900; hypothetical protein. (279 aa)    
Predicted Functional Partners:
Apre_0311
Putative membrane protein; KEGG: dde:Dde_0097 hypothetical protein.
 
     0.814
Apre_0310
Putative membrane protein; KEGG: bsu:BSU08700 hypothetical protein.
 
     0.805
Apre_0308
KEGG: pcr:Pcryo_0141 hypothetical protein.
  
  
 0.598
rbsK
PfkB domain protein; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.574
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
     
 0.471
Apre_1487
PFAM: Cna B domain protein; KEGG: bca:BCE_0961 cell wall anchor domain-containing protein.
  
     0.463
Apre_1625
PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: cak:Caul_0319 ATPase BadF/BadG/BcrA/BcrD type.
  
     0.411
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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