STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0320PFAM: AzlC family protein; KEGG: hpj:jhp1251 hypothetical protein. (227 aa)    
Predicted Functional Partners:
Apre_0319
PFAM: branched-chain amino acid transport; KEGG: hiq:CGSHiGG_02420 putative branched-chain amino acid permease.
 
  
 0.976
Apre_0318
Hypothetical protein.
       0.638
Apre_0322
Dipeptidylaminopeptidase/acylaminoacyl- peptidase-like protein; KEGG: rpc:RPC_1673 OsmC-like protein.
       0.542
Apre_0321
KEGG: bha:BH1470 hypothetical protein.
       0.541
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.