Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Apre_0159 | ybeY | Apre_0159 | Apre_0330 | PFAM: glycosyl transferase group 1; KEGG: mfa:Mfla_0790 1,2-diacylglycerol 3- glucosyltransferase. | Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.909 |
| Apre_0329 | Apre_0331 | Apre_0329 | Apre_0331 | PFAM: PhoH family protein; KEGG: bcy:Bcer98_3031 PhoH family protein. | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | 0.883 |
| Apre_0329 | era | Apre_0329 | Apre_0332 | PFAM: PhoH family protein; KEGG: bcy:Bcer98_3031 PhoH family protein. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.893 |
| Apre_0329 | recO | Apre_0329 | Apre_0333 | PFAM: PhoH family protein; KEGG: bcy:Bcer98_3031 PhoH family protein. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.938 |
| Apre_0329 | ybeY | Apre_0329 | Apre_0330 | PFAM: PhoH family protein; KEGG: bcy:Bcer98_3031 PhoH family protein. | Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.979 |
| Apre_0331 | Apre_0329 | Apre_0331 | Apre_0329 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | PFAM: PhoH family protein; KEGG: bcy:Bcer98_3031 PhoH family protein. | 0.883 |
| Apre_0331 | era | Apre_0331 | Apre_0332 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.943 |
| Apre_0331 | recO | Apre_0331 | Apre_0333 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.834 |
| Apre_0331 | ybeY | Apre_0331 | Apre_0330 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.944 |
| Apre_0595 | Apre_1020 | Apre_0595 | Apre_1020 | PFAM: phosphatidate cytidylyltransferase; KEGG: bcr:BCAH187_A3869 phosphatidate cytidylyltransferase; Belongs to the CDS family. | PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: bha:BH1635 hypothetical protein; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family. | 0.930 |
| Apre_0595 | gpsA | Apre_0595 | Apre_0918 | PFAM: phosphatidate cytidylyltransferase; KEGG: bcr:BCAH187_A3869 phosphatidate cytidylyltransferase; Belongs to the CDS family. | PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: bsu:BSU22830 NAD(P)H-dependent glycerol-3- phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. | 0.505 |
| Apre_0595 | ybeY | Apre_0595 | Apre_0330 | PFAM: phosphatidate cytidylyltransferase; KEGG: bcr:BCAH187_A3869 phosphatidate cytidylyltransferase; Belongs to the CDS family. | Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.938 |
| Apre_1020 | Apre_0595 | Apre_1020 | Apre_0595 | PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: bha:BH1635 hypothetical protein; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family. | PFAM: phosphatidate cytidylyltransferase; KEGG: bcr:BCAH187_A3869 phosphatidate cytidylyltransferase; Belongs to the CDS family. | 0.930 |
| Apre_1020 | gpsA | Apre_1020 | Apre_0918 | PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: bha:BH1635 hypothetical protein; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family. | PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: bsu:BSU22830 NAD(P)H-dependent glycerol-3- phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. | 0.882 |
| Apre_1020 | ybeY | Apre_1020 | Apre_0330 | PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: bha:BH1635 hypothetical protein; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family. | Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.936 |
| era | Apre_0329 | Apre_0332 | Apre_0329 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | PFAM: PhoH family protein; KEGG: bcy:Bcer98_3031 PhoH family protein. | 0.893 |
| era | Apre_0331 | Apre_0332 | Apre_0331 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | 0.943 |
| era | recO | Apre_0332 | Apre_0333 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.924 |
| era | ybeY | Apre_0332 | Apre_0330 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.987 |
| gpsA | Apre_0595 | Apre_0918 | Apre_0595 | PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: bsu:BSU22830 NAD(P)H-dependent glycerol-3- phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. | PFAM: phosphatidate cytidylyltransferase; KEGG: bcr:BCAH187_A3869 phosphatidate cytidylyltransferase; Belongs to the CDS family. | 0.505 |
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