STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0365Cysteine desulfurase; PFAM: aminotransferase class V; KEGG: sat:SYN_01071 cysteine desulfurase / selenocysteine lyase. (378 aa)    
Predicted Functional Partners:
Apre_1636
TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: lpc:LPC_2694 nitrogen fixation protein (Fe-S cluster formation) NifU.
 
 0.977
Apre_0367
PFAM: SirA family protein; KEGG: sat:SYN_01072 putative cytoplasmic protein; Belongs to the sulfur carrier protein TusA family.
 
 
 
 0.934
Apre_0368
KEGG: ppd:Ppro_1707 selenide, water dikinase; TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein.
   
 0.887
Apre_1639
TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: bsu:BSU32670 hypothetical protein.
 
 
 0.830
Apre_1638
PFAM: SufBD protein; KEGG: bha:BH3470 hypothetical protein.
 
 0.827
Apre_1640
KEGG: bcr:BCAH187_A5123 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.825
Apre_0366
Hypothetical protein.
       0.782
Apre_0361
TIGRFAM: selenium-dependent molybdenum hydroxylase system protein, YqeB family; KEGG: eum:ECUMN_3218 conserved hypothetical protein; putative NAD(P)-binding Rossman fold.
 
     0.666
Apre_0924
PFAM: aminotransferase class V; KEGG: bcy:Bcer98_3320 aminotransferase class V.
 
  
0.637
Apre_0565
PFAM: aminotransferase class V; KEGG: bsu:BSU27510 hypothetical protein.
 
  
0.620
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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