STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0368KEGG: ppd:Ppro_1707 selenide, water dikinase; TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein. (337 aa)    
Predicted Functional Partners:
Apre_0367
PFAM: SirA family protein; KEGG: sat:SYN_01072 putative cytoplasmic protein; Belongs to the sulfur carrier protein TusA family.
 
   
 0.961
Apre_0764
TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; FAD dependent oxidoreductase; HI0933 family protein; KEGG: bha:BH3571 thioredoxin reductase (NADPH).
     
 0.910
Apre_1720
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; HI0933 family protein; KEGG: afw:Anae109_2361 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
     
 0.910
Apre_1637
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
   
 0.907
Apre_0365
Cysteine desulfurase; PFAM: aminotransferase class V; KEGG: sat:SYN_01071 cysteine desulfurase / selenocysteine lyase.
   
 0.887
Apre_0366
Hypothetical protein.
       0.784
Apre_0565
PFAM: aminotransferase class V; KEGG: bsu:BSU27510 hypothetical protein.
    
 0.681
Apre_0924
PFAM: aminotransferase class V; KEGG: bcy:Bcer98_3320 aminotransferase class V.
    
 0.585
Apre_0372
TIGRFAM: metal dependent phophohydrolase; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: scl:sce1090 hypothetical protein.
     
 0.484
tig
Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.
 
     0.452
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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