STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0396PFAM: NUDIX hydrolase; KEGG: ATNUDT3; ATNUDT3 (Arabidopsis thaliana Nudix hydrolase homolog 3); hydrolase. (171 aa)    
Predicted Functional Partners:
Apre_0395
Inorganic diphosphatase; KEGG: pca:Pcar_1659 putative manganese-dependent inorganic pyrophosphatase; PFAM: DHHA2 domain protein; CBS domain containing protein; DRTGG domain protein; SMART: CBS domain containing protein.
       0.616
Apre_0394
PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: pca:Pcar_2212 CBS domain-containing protein.
       0.589
Apre_0397
PFAM: sodium:dicarboxylate symporter; KEGG: pmy:Pmen_0129 sodium:dicarboxylate symporter; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
       0.551
Apre_0393
PFAM: Xanthine/uracil/vitamin C permease; KEGG: vsp:VS_2421 permease family protein.
       0.421
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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