STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0399PFAM: Domain of unknown function DUF1858; KEGG: hypothetical protein. (75 aa)    
Predicted Functional Partners:
Apre_0312
Hypothetical protein.
 
    0.547
Apre_0400
Hypothetical protein.
       0.547
Apre_1007
Hypothetical protein.
  
     0.466
Apre_0891
KEGG: hypothetical protein.
  
     0.463
Apre_0065
PFAM: Hemerythrin HHE cation binding domain protein; KEGG: sat:SYN_00862 putative cytoplasmic protein.
 
     0.459
Apre_0935
TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: sat:SYN_03008 rrf2 family protein.
 
  
 0.424
Apre_1008
PFAM: Radical SAM domain protein; KEGG: nar:Saro_3029 radical SAM family protein.
 
     0.422
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.