STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0438PFAM: SH3 type 3 domain protein; Transglycosylase domain protein; protein of unknown function DUF1058; SMART: SH3 domain protein; KEGG: bca:BCE_5360 hypothetical protein. (289 aa)    
Predicted Functional Partners:
Apre_0580
PFAM: acyltransferase 3; KEGG: bsu:BSU27140 hypothetical protein.
  
     0.604
Apre_0091
Hypothetical protein; KEGG: bcr:BCAH187_C0151 S-layer domain ribonuclease.
  
     0.603
Apre_1259
PFAM: peptidoglycan hydrolase; SH3 type-5 domain protein.
 
    0.591
Apre_0013
PFAM: peptidoglycan hydrolase; KEGG: hypothetical protein.
  
     0.586
Apre_0324
Hypothetical protein; KEGG: AGAP002737-PA.
  
     0.585
ureE
UreE urease accessory domain protein; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.
  
     0.541
Apre_0187
PFAM: peptidase S41; KEGG: similar to Interphotoreceptor retinoid- binding protein precursor (IRBP) (Interstitial retinol-binding protein).
 
     0.540
Apre_0524
PFAM: metallophosphoesterase.
 
     0.538
Apre_1516
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: rpi:Rpic_4263 transcriptional regulator, ArsR family.
  
     0.536
Apre_0789
Putative transcriptional regulator, XRE family; PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: bca:BCE_4032 CBS domain-containing protein.
  
     0.530
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.