STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0449PFAM: Chloride channel core; KEGG: ppr:PBPRA0530 chloride channel protein. (428 aa)    
Predicted Functional Partners:
Apre_0448
PFAM: aldo/keto reductase; 4Fe-4S ferredoxin iron- sulfur binding domain protein; KEGG: pca:Pcar_1733 aldo/keto reductase family oxidoreductase.
       0.541
Apre_1042
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: eca:ECA2957 pyruvate-flavodoxin oxidoreductase.
     
 0.489
Apre_0028
TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: dno:DNO_0828 sodium:alanine symporter family protein.
  
    0.452
Apre_0099
TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: hhe:HH1631 amino-acid transport protein.
  
    0.452
Apre_1513
TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: vsa:VSAL_I2493 putative sodium/alanine symporter.
  
    0.452
Apre_1695
TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: vha:VIBHAR_02469 hypothetical protein.
  
    0.452
Apre_1063
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dal:Dalk_4144 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
     
 0.442
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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