STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0455Putative transcriptional regulator, RpiR family; KEGG: bsu:BSU08190 hypothetical protein. (211 aa)    
Predicted Functional Partners:
Apre_0456
Transcriptional regulator, RpiR family; PFAM: sugar isomerase (SIS); helix-turn-helix protein RpiR; KEGG: bsu:BSU08190 hypothetical protein.
 
     0.933
Apre_0454
PFAM: glycoside hydrolase family 4; KEGG: eta:ETA_14010 6-phospho-alpha-glucosidase.
 
  
 0.812
Apre_0524
PFAM: metallophosphoesterase.
 
    0.772
Apre_0408
KEGG: bca:BCE_3356 hypothetical protein.
  
     0.766
Apre_0324
Hypothetical protein; KEGG: AGAP002737-PA.
  
     0.762
Apre_0897
KEGG: hypothetical protein.
  
     0.750
ureE
UreE urease accessory domain protein; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.
  
     0.745
Apre_0453
TIGRFAM: PTS system, alpha-glucoside-specific IIBC subunit; PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system EIIC; phosphotransferase system PTS EIIB protein; KEGG: bsu:BSU08200 phosphotransferase system (PTS) maltose-specific enzyme IICB component.
 
  
 0.744
Apre_1283
Hypothetical protein.
  
     0.744
Apre_0091
Hypothetical protein; KEGG: bcr:BCAH187_C0151 S-layer domain ribonuclease.
  
     0.737
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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