STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0481Hypothetical protein. (228 aa)    
Predicted Functional Partners:
Apre_0482
PFAM: peptidase S58 DmpA; KEGG: plu:plu2239 hypothetical protein.
       0.782
Apre_1306
PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: bsu:BSU40360 hypothetical protein.
    
  0.647
Apre_1357
D-lactate dehydrogenase (cytochrome); PFAM: FAD linked oxidase domain protein; KEGG: bcz:BCZK1190 (S)-2-hydroxy-acid oxidase, subunit D.
  
 0.625
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
       0.541
Apre_0484
TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: ban:BA5722 single-strand DNA-binding protein.
       0.534
rpsR
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
       0.502
Apre_0480
PFAM: sodium:dicarboxylate symporter; KEGG: swp:swp_1386 sodium:dicarboxylate symporter; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
       0.480
Apre_1042
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: eca:ECA2957 pyruvate-flavodoxin oxidoreductase.
  
  
 0.480
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
  
  
 0.420
Apre_0479
Hypothetical protein; KEGG: bcr:BCAH187_A4140 oligo-1,6-glucosidase.
  
  
 0.405
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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