STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
argHTIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: bcb:BCB4264_A4737 argininosuccinate lyase. (457 aa)    
Predicted Functional Partners:
argG
KEGG: lpc:LPC_2852 argininosuccinate synthase; TIGRFAM: argininosuccinate synthase; PFAM: argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
 
 
 0.999
Apre_0489
KEGG: sse:Ssed_3760 extracellular solute-binding protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: extracellular solute-binding protein family 3; binding-protein-dependent transport systems inner membrane component; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor.
  
  
 0.963
arcA
Arginine deiminase; PFAM: amidinotransferase; KEGG: bcy:Bcer98_0348 arginine deiminase.
     
 0.920
Apre_0092
PFAM: fumarate lyase; KEGG: bha:BH1426 aspartate ammonia-lyase.
     
0.911
Apre_1101
PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: sse:Ssed_3318 isocitrate dehydrogenase.
  
 
 0.867
Apre_0490
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_3762 ABC transporter-related protein.
 
  
 0.841
Apre_1100
PFAM: Citrate synthase; KEGG: bca:BCE_4725 methylcitrate synthase.
    
 0.841
fumC
Fumarate lyase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
   
 
0.830
Apre_0138
KEGG: kpe:KPK_2907 oxidoreductase, FAD/FMN- binding/flavocytochrome c; TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FMN-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; HI0933 family protein.
    
 0.830
Apre_1006
PFAM: Orn/Lys/Arg decarboxylase major region; KEGG: bca:BCE_0027 lysine decarboxylase.
     
 0.823
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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