STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0490PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_3762 ABC transporter-related protein. (241 aa)    
Predicted Functional Partners:
Apre_0489
KEGG: sse:Ssed_3760 extracellular solute-binding protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: extracellular solute-binding protein family 3; binding-protein-dependent transport systems inner membrane component; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor.
 0.999
Apre_1532
KEGG: gdj:Gdia_2062 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: extracellular solute-binding protein family 3; binding-protein-dependent transport systems inner membrane component; SMART: extracellular solute-binding protein family 3.
 
 0.992
argG
KEGG: lpc:LPC_2852 argininosuccinate synthase; TIGRFAM: argininosuccinate synthase; PFAM: argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
  
 0.872
argH
TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: bcb:BCB4264_A4737 argininosuccinate lyase.
 
  
 0.841
Apre_0418
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: scl:sce5644 carbohydrate ABC transporter.
 
     
0.770
Apre_1188
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sus:Acid_4487 ABC transporter related.
 
     
0.625
Apre_0417
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: bsu:BSU08220 hypothetical protein.
 
     
0.469
Apre_0690
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: abu:Abu_0339 ABC transporter, ATP- binding/permease protein.
 
     
0.461
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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