STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0504PFAM: beta-lactamase domain protein; KEGG: cha:CHAB381_0232 flavodoxin. (405 aa)    
Predicted Functional Partners:
Apre_1498
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dal:Dalk_2354 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
  
 0.923
Apre_1362
PFAM: Desulfoferrodoxin ferrous iron-binding region; KEGG: mgm:Mmc1_2950 desulfoferrodoxin, ferrous iron- binding region.
 
  
 0.664
Apre_1657
PFAM: Rubrerythrin; KEGG: sat:SYN_02523 rubrerythrin.
 
  
 0.509
Apre_0505
PFAM: acyl-CoA dehydrogenase domain protein; Electron transfer flavoprotein alpha subunit; Acyl-CoA dehydrogenase type 2 domain; KEGG: bha:BH3798 acyl-CoA dehydrogenase.
       0.433
Apre_1490
PFAM: FAD dependent oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: sat:SYN_02446 glycerol-3-phosphate dehydrogenase.
  
  
 0.423
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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