STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0506PFAM: nucleoside 2-deoxyribosyltransferase. (170 aa)    
Predicted Functional Partners:
Apre_1524
PFAM: protein of unknown function DUF1002; KEGG: bsu:BSU23370 hypothetical protein.
  
     0.610
Apre_0508
PFAM: metallophosphoesterase; KEGG: bcb:BCB4264_A2504 phosphoesterase.
       0.590
Apre_0507
TIGRFAM: NAD+ synthetase; PFAM: NAD synthase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pca:Pcar_2216 NAD synthetase.
       0.567
lacD
PFAM: deoxyribose-phosphate aldolase/phospho-2- dehydro-3-deoxyheptonate aldolase; KEGG: bcr:BCAH187_A2111 tagatose 1,6-diphosphate aldolase; Belongs to the aldolase LacD family.
  
     0.553
Apre_0167
Hypothetical protein.
  
     0.550
Apre_1259
PFAM: peptidoglycan hydrolase; SH3 type-5 domain protein.
  
     0.534
Apre_1487
PFAM: Cna B domain protein; KEGG: bca:BCE_0961 cell wall anchor domain-containing protein.
  
     0.506
Apre_0324
Hypothetical protein; KEGG: AGAP002737-PA.
  
     0.505
Apre_0257
Hypothetical protein; KEGG: CG13185; K01509 adenosinetriphosphatase.
  
     0.493
Apre_0314
Hypothetical protein.
  
     0.438
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.