STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0540PFAM: lipopolysaccharide biosynthesis protein; KEGG: bce:BC5278 chain length regulator (capsular polysaccharide biosynthesis). (232 aa)    
Predicted Functional Partners:
Apre_0541
TIGRFAM: capsular exopolysaccharide family; KEGG: bsu:BSU36250 hypothetical protein.
 
 0.993
Apre_0542
Protein-tyrosine-phosphatase; PFAM: PHP domain protein; KEGG: bsu:BSU36240 hypothetical protein.
 
 
 0.979
Apre_0248
ATPase involved in chromosome partitioning-like protein; KEGG: rce:RC1_4006 succinoglycan biosynthesis transport protein ExoP.
 
 
 0.918
Apre_0543
PFAM: SH3 type 3 domain protein; KEGG: MAL13P1.310.
       0.782
Apre_1269
PFAM: sugar transferase; KEGG: bce:BC5270 undecaprenyl-phosphate galactosephosphotransferase.
 
  
 0.555
Apre_1493
PFAM: sugar transferase; KEGG: bha:BH3716 galactosyltransferase.
 
  
 0.546
Apre_1525
ATP-binding protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
 
 0.503
Apre_1272
PFAM: polysaccharide biosynthesis protein CapD; 3- beta hydroxysteroid dehydrogenase/isomerase; short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: gme:Gmet_1338 polysaccharide biosynthesis protein CapD.
 
  
 0.478
Apre_0532
KEGG: sat:SYN_00642 hypothetical protein.
       0.465
Apre_0533
Phosphoesterase RecJ domain protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family.
       0.465
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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