STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0543PFAM: SH3 type 3 domain protein; KEGG: MAL13P1.310. (153 aa)    
Predicted Functional Partners:
Apre_0540
PFAM: lipopolysaccharide biosynthesis protein; KEGG: bce:BC5278 chain length regulator (capsular polysaccharide biosynthesis).
       0.782
Apre_0541
TIGRFAM: capsular exopolysaccharide family; KEGG: bsu:BSU36250 hypothetical protein.
       0.782
Apre_0542
Protein-tyrosine-phosphatase; PFAM: PHP domain protein; KEGG: bsu:BSU36240 hypothetical protein.
       0.782
Apre_0532
KEGG: sat:SYN_00642 hypothetical protein.
       0.465
Apre_0533
Phosphoesterase RecJ domain protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family.
       0.465
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
       0.465
Apre_0535
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
       0.465
Apre_0536
PFAM: GCN5-related N-acetyltransferase; KEGG: bcr:BCAH187_A4903 acetyltransferase, GNAT family.
       0.465
Apre_0537
TIGRFAM: primosome, DnaD subunit; PFAM: DnaD and phage-associated region.
       0.465
Apre_0538
PFAM: Chromosomal replication initiator DnaA; SMART: AAA ATPase; KEGG: bcr:BCAH187_A4023 putative prophage LambdaBa02, DNA replication protein DnaC.
       0.465
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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