STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0580PFAM: acyltransferase 3; KEGG: bsu:BSU27140 hypothetical protein. (602 aa)    
Predicted Functional Partners:
Apre_0438
PFAM: SH3 type 3 domain protein; Transglycosylase domain protein; protein of unknown function DUF1058; SMART: SH3 domain protein; KEGG: bca:BCE_5360 hypothetical protein.
  
     0.604
Apre_0306
PFAM: major facilitator superfamily MFS_1; KEGG: cjj:CJJ81176_1679 major facilitator superfamily protein.
  
    0.582
Apre_0897
KEGG: hypothetical protein.
 
     0.507
Apre_0091
Hypothetical protein; KEGG: bcr:BCAH187_C0151 S-layer domain ribonuclease.
  
     0.506
Apre_1259
PFAM: peptidoglycan hydrolase; SH3 type-5 domain protein.
  
   
 0.504
Apre_0013
PFAM: peptidoglycan hydrolase; KEGG: hypothetical protein.
  
     0.499
Apre_0985
PFAM: domain of unknown function DUF1727; Mur ligase middle domain protein; KEGG: bcy:Bcer98_0233 UDP-N-acetylmuramoylalanyl-D- glutamyl-2,6-diaminopimelate--D-alanyl- D-alanyl ligase.
  
     0.487
Apre_0989
PFAM: protein of unknown function DUF322.
  
     0.481
coaX
Putative transcriptional acitvator, Baf family; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.
       0.446
Apre_0579
Putative membrane protein.
       0.446
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.