STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0603PFAM: ATPase associated with various cellular activities AAA_5; ATPase associated with various cellular activities AAA_3; SMART: AAA ATPase; KEGG: bsu:BSU19390 hypothetical protein. (295 aa)    
Predicted Functional Partners:
Apre_0602
KEGG: bar:GBAA0623 hypothetical protein.
 
  
 0.965
Apre_1369
KEGG: bcu:BCAH820_0678 hypothetical protein.
 
  
 0.863
Apre_0604
Hypothetical protein.
       0.781
Apre_0605
PFAM: carbon starvation protein CstA; KEGG: bar:GBAA1822 carbon starvation protein A, putative.
 
    0.685
Apre_0601
Hypothetical protein.
       0.635
Apre_1006
PFAM: Orn/Lys/Arg decarboxylase major region; KEGG: bca:BCE_0027 lysine decarboxylase.
   
 
 0.537
Apre_0229
Malate dehydrogenase (oxaloacetate- decarboxylating); PFAM: malic protein NAD-binding; malic protein domain protein; KEGG: bcb:BCB4264_A4713 putative malate dehydrogenase.
  
    0.447
nusA
NusA antitermination factor; Participates in both transcription termination and antitermination.
     
 0.443
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
   
   0.421
Apre_0611
PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: sfu:Sfum_1231 phosphoesterase, RecJ domain protein.
  
    0.417
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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