STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0654KEGG: hypothetical protein. (265 aa)    
Predicted Functional Partners:
Apre_0650
PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; KEGG: gsu:GSU2043 type 4 prepilin-like proteins leader peptide processing enzyme.
       0.778
Apre_0652
Hypothetical protein.
       0.778
Apre_0653
Hypothetical protein.
       0.778
Apre_0649
KEGG: vco:VC0395_A1999 fimbrial protein.
       0.773
Apre_0651
KEGG: shm:Shewmr7_3029 methylation site containing protein.
       0.773
Apre_0648
PFAM: type II secretion system protein; KEGG: mxa:MXAN_2512 general secretion pathway protein F.
       0.766
pyrH
Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
       0.636
frr
Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.
       0.636
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
       0.583
Apre_0645
TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: pha:PSHAa2154 efflux pump.
       0.464
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.