rpmB protein (Anaerococcus prevotii DSM 20548)

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rpmB

TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: dol:Dole_2056 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. (62 aa)

Predicted Functional Partners:

rpmF

0.980

rpmG

0.980

rpsT

0.980

rpsO

0.979

rpsZ

0.979

rpmI

0.978

rplU

0.977

rplM

0.977

rpsF

0.976

rpsR

0.976

Your Current Organism:

Anaerococcus prevotii DSM 20548

NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplM	rplU	Apre_1395	Apre_0926	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.978
rplM	rpmB	Apre_1395	Apre_0670	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: dol:Dole_2056 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.977
rplM	rpmF	Apre_1395	Apre_0656	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: ppd:Ppro_1740 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.975
rplM	rpmG	Apre_1395	Apre_1150	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; KEGG: pca:Pcar_0687 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	0.979
rplM	rpmI	Apre_1395	Apre_1343	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: dps:DP1426 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.	0.977
rplM	rpsF	Apre_1395	Apre_0483	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.978
rplM	rpsO	Apre_1395	Apre_0614	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.985
rplM	rpsR	Apre_1395	Apre_0485	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.976
rplM	rpsT	Apre_1395	Apre_1184	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.978
rplM	rpsZ	Apre_1395	Apre_1561	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.	0.980
rplU	rplM	Apre_0926	Apre_1395	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.978
rplU	rpmB	Apre_0926	Apre_0670	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: dol:Dole_2056 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.977
rplU	rpmF	Apre_0926	Apre_0656	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: ppd:Ppro_1740 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.985
rplU	rpmG	Apre_0926	Apre_1150	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; KEGG: pca:Pcar_0687 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	0.975
rplU	rpmI	Apre_0926	Apre_1343	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: dps:DP1426 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.	0.975
rplU	rpsF	Apre_0926	Apre_0483	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.975
rplU	rpsO	Apre_0926	Apre_0614	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.984
rplU	rpsR	Apre_0926	Apre_0485	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.978
rplU	rpsT	Apre_0926	Apre_1184	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.979
rplU	rpsZ	Apre_0926	Apre_1561	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.	0.973

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