STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0683KEGG: hso:HS_0428 hypothetical protein. (113 aa)    
Predicted Functional Partners:
Apre_0684
PFAM: regulatory protein TetR; KEGG: dno:DNO_0445 TetR family transcriptional regulator.
 
   
 0.688
Apre_0693
PFAM: Resolvase domain; Recombinase; KEGG: bca:BCE_0419 DNA recombinase, putative.
 
  
 0.654
Apre_1677
PFAM: NADPH-dependent FMN reductase; KEGG: rme:Rmet_2021 NADPH-dependent FMN reductase.
  
 
 0.596
Apre_0706
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: cha:CHAB381_0626 AraC family transcriptional regulator.
 
     0.589
Apre_0690
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: abu:Abu_0339 ABC transporter, ATP- binding/permease protein.
 
     0.571
Apre_0691
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: abu:Abu_0338 ABC transporter, ATP- binding/permease protein.
 
     0.560
Apre_0527
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_2515 putative alkanesulfonate ABC transporter, permease protein.
  
  
 0.529
Apre_0528
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bca:BCE_2961 sulfonate ABC transporter, ATP- binding protein, putative.
  
  
 0.517
Apre_0526
ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein; KEGG: bra:BRADO4365 putative alkanesulfonate ABC transporter, substrate binding protein.
  
  
 0.512
Apre_0793
KEGG: hypothetical protein.
  
  
 0.512
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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