STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0689PFAM: extracellular solute-binding protein family 5; KEGG: bha:BH0567 nickel transport system (nickel- binding protein). (544 aa)    
Predicted Functional Partners:
Apre_0685
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1797 nickel ABC transporter (permease).
 
 0.967
Apre_0686
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH2076 oligopeptide ABC transporter (permease).
 
 
 0.966
Apre_0687
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bra:BRADO0891 peptide ABC transporter ATP- binding protein.
 
  
 0.887
Apre_0688
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spe:Spro_3154 ABC transporter-related protein.
 
  
 0.886
Apre_0388
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcs:BCAN_B1031 hypothetical protein.
 
 0.853
Apre_0389
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ban:BA4731 oligopeptide ABC transporter, oligopeptide-binding protein.
 
 
 0.848
Apre_0016
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gsu:GSU1434 peptide ABC transporter, permease protein.
 
 0.833
Apre_0017
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gur:Gura_2052 binding-protein-dependent transport systems inner membrane component.
 
 
 0.788
Apre_1042
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: eca:ECA2957 pyruvate-flavodoxin oxidoreductase.
  
    0.788
Apre_0465
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bsu:BSU11440 oligopeptide ABC transporter (permease).
 
 0.777
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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