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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0706Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: cha:CHAB381_0626 AraC family transcriptional regulator. (330 aa)    
Predicted Functional Partners:
Apre_0707
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cha:CHAB381_0627 ABC transporter, ATP- binding/permease protein.
 
  
 0.892
Apre_0708
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cha:CHAB381_0628 ABC transporter, ATP-binding protein.
 
  
 0.892
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.594
Apre_0683
KEGG: hso:HS_0428 hypothetical protein.
 
     0.589
Apre_0691
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: abu:Abu_0338 ABC transporter, ATP- binding/permease protein.
 
  
 0.506
Apre_0690
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: abu:Abu_0339 ABC transporter, ATP- binding/permease protein.
 
  
 0.473
Apre_0733
KEGG: viral A-type inclusion protein.
  
     0.469
Apre_0734
HIRAN; PFAM: HIRAN; KEGG: rce:RC1_1924 hypothetical protein.
  
     0.467
Apre_0744
PFAM: protein of unknown function DUF214; KEGG: bcy:Bcer98_2177 hypothetical protein.
  
    0.442
Apre_0684
PFAM: regulatory protein TetR; KEGG: dno:DNO_0445 TetR family transcriptional regulator.
  
   
 0.404
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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