STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0717KEGG: bca:BCE_0397 phage terminase, large subunit, putative. (58 aa)    
Predicted Functional Partners:
Apre_0592
KEGG: bca:BCE_0390 hypothetical protein.
 
     0.808
Apre_0830
PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; KEGG: dvl:Dvul_0872 nuclease.
 
     0.766
Apre_0832
Hypothetical protein.
 
     0.756
Apre_0693
PFAM: Resolvase domain; Recombinase; KEGG: bca:BCE_0419 DNA recombinase, putative.
 
   
 0.716
Apre_0849
TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: sbn:Sbal195_2891 TP901 family phage tail tape measure protein.
 
   
 0.692
Apre_0718
Hypothetical protein.
       0.528
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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