STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0739PFAM: YSIRK Gram-positive signal peptide; KEGG: hypothetical protein. (2035 aa)    
Predicted Functional Partners:
Apre_0714
KEGG: bcb:BCB4264_A2969 hypothetical protein.
  
     0.645
Apre_0033
KEGG: U-box domain-containing protein.
  
     0.640
Apre_1120
PFAM: TrkA-N domain protein; TrkA-C domain protein; Ion transport 2 domain protein; KEGG: TrkA-N domain protein.
 
     0.608
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.590
Apre_1520
Signal transduction histidine kinase-like protein; KEGG: bcz:BCZK2894 sensor histidine kinase.
  
     0.539
Apre_0588
TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: dac:Daci_4253 hypothetical protein.
  
     0.504
Apre_0113
Hypothetical protein; KEGG: mgm:Mmc1_1169 poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit.
  
     0.465
Apre_0713
Hydrolase or acyltransferase (alpha/beta hydrolase superfamily)-like protein; KEGG: atc:AGR_C_3731 hypothetical protein.
  
     0.461
Apre_0738
Hypothetical protein.
  
     0.450
Apre_1387
PFAM: glutaredoxin; KEGG: cps:CPS_3634 hypothetical protein.
  
    0.449
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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