STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0798Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bsu:BSU21020 hypothetical protein. (73 aa)    
Predicted Functional Partners:
Apre_0799
Hypothetical protein.
       0.578
Apre_0800
Hypothetical protein.
       0.570
Apre_0808
Hypothetical protein; KEGG: bcu:BCAH820_0561 DnaA analog, DnaD domain protein.
       0.539
Apre_0809
SMART: AAA ATPase; KEGG: bar:GBAA0439 hypothetical protein.
  
    0.537
Apre_0797
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; peptidase S24 and S26 domain protein; SMART: helix-turn-helix domain protein; KEGG: bce:BC3704 LexA repressor.
      
0.533
Apre_0801
Hypothetical protein.
       0.532
Apre_0802
Hypothetical protein.
       0.532
Apre_0811
TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: bcb:BCB4264_A5600 single-stranded DNA-binding protein.
       0.529
Apre_0803
Hypothetical protein.
       0.525
Apre_0804
PFAM: Gp157 family protein; KEGG: bcy:Bcer98_2962 siphovirus GP157 family protein.
       0.525
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.