STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_0874FHA domain containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: hypothetical protein. (167 aa)    
Predicted Functional Partners:
Apre_0667
PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; PASTA domain containing protein; SMART: serine/threonine protein kinase; tyrosine protein kinase; PASTA domain containing protein; KEGG: bsu:BSU15770 protein kinase.
 
 
 
 0.976
Apre_0875
PFAM: cell cycle protein; KEGG: bcy:Bcer98_2561 stage V sporulation protein E; Belongs to the SEDS family.
 
   
 0.939
Apre_0876
Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; KEGG: gur:Gura_2858 peptidoglycan glycosyltransferase.
 
   
 0.927
Apre_0017
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gur:Gura_2052 binding-protein-dependent transport systems inner membrane component.
   
  0.832
Apre_0521
PFAM: SMC domain protein; KEGG: bcb:BCB4264_A2326 putative exonuclease.
    
 0.789
Apre_1333
PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: hypothetical protein.
 
  
 0.735
sbcD
Nuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
    
 0.601
Apre_0776
PFAM: metallophosphoesterase; KEGG: bcr:BCAH187_A1178 DNA repair exonuclease family protein.
    
 0.601
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
 
     0.597
Apre_0666
PFAM: Protein phosphatase 2C-like; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: bha:BH2505 hypothetical protein.
 
 
 0.573
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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