Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Apre_0890KEGG: dal:Dalk_2634 hypothetical protein; TIGRFAM: conserved hypothetical protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB. (315 aa)    
Predicted Functional Partners:
Apre_0891
KEGG: hypothetical protein.
       0.808
Apre_0889
Hypothetical protein.
       0.781
Apre_0886
SMART: RNA binding S1 domain protein; KEGG: mmw:Mmwyl1_2031 RNA-binding S1 domain-containing protein; Belongs to the CvfB family.
       0.762
Apre_0887
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: gme:Gmet_3548 PpiC-type peptidyl-prolyl cis- trans isomerase.
       0.762
Apre_0888
Hypothetical protein; KEGG: hdu:HD1832 aminoacyl-histidine dipeptidase.
       0.758
Apre_0892
KEGG: hypothetical protein.
 
     0.743
Apre_0885
PFAM: protein of unknown function DUF161; KEGG: bsu:BSU35280 hypothetical protein.
       0.733
Apre_0213
PFAM: putative rRNA methylase; KEGG: nma:NMA0960 hypothetical protein NMA0960.
 
    0.680
Apre_0893
Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
  
    0.680
Apre_0896
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: ban:BA1976 sensor histidine kinase.
       0.670
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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