STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_1006PFAM: Orn/Lys/Arg decarboxylase major region; KEGG: bca:BCE_0027 lysine decarboxylase. (445 aa)    
Predicted Functional Partners:
arcA
Arginine deiminase; PFAM: amidinotransferase; KEGG: bcy:Bcer98_0348 arginine deiminase.
    
 0.841
argH
TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: bcb:BCB4264_A4737 argininosuccinate lyase.
     
 0.823
Apre_1008
PFAM: Radical SAM domain protein; KEGG: nar:Saro_3029 radical SAM family protein.
 
     0.793
Apre_1007
Hypothetical protein.
 
     0.786
Apre_0951
PFAM: Aluminium resistance family protein; Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: bcy:Bcer98_2383 aluminium resistance family protein.
 
   
 0.746
Apre_1005
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: bha:BH3647 transcriptional regulator.
 
     0.635
Apre_0603
PFAM: ATPase associated with various cellular activities AAA_5; ATPase associated with various cellular activities AAA_3; SMART: AAA ATPase; KEGG: bsu:BSU19390 hypothetical protein.
   
 
 0.537
Apre_1368
PFAM: ATPase associated with various cellular activities AAA_5; ATPase associated with various cellular activities AAA_3; KEGG: bar:GBAA0624 NorQ protein, putative.
   
 
 0.537
sepF
Protein of unknown function DUF552; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA.
  
     0.498
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
       0.471
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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