STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_1049KEGG: ecf:ECH74115_1558 hypothetical protein. (265 aa)    
Predicted Functional Partners:
Apre_1050
PFAM: UvrD/REP helicase; KEGG: tdn:Suden_0437 UvrD/REP helicase.
 
     0.654
Apre_0537
TIGRFAM: primosome, DnaD subunit; PFAM: DnaD and phage-associated region.
  
     0.652
map
Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
       0.637
Apre_1260
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; KEGG: bcy:Bcer98_3970 ECF subfamily RNA polymerase sigma-24 factor.
  
   
 0.631
Apre_1138
Hypothetical protein.
  
     0.558
Apre_0364
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bph:Bphy_4478 glyoxalase/bleomycin resistance protein/dioxygenase.
  
  
 0.545
Apre_1307
PFAM: ABC-2 type transporter; KEGG: cff:CFF8240_0262 ABC-type multidrug transport system permease component.
  
  
 0.544
Apre_1308
Hypothetical protein; KEGG: bcb:BCB4264_A1805 ABC transporter, permease protein.
  
  
 0.544
Apre_0312
Hypothetical protein.
  
     0.517
Apre_1369
KEGG: bcu:BCAH820_0678 hypothetical protein.
  
     0.501
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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