STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_1087PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: pca:Pcar_1846 NADP-reducing hydrogenase chain A. (164 aa)    
Predicted Functional Partners:
Apre_1085
TIGRFAM: hydrogenase, Fe-only; PFAM: hydrogenase large subunit domain protein; iron hydrogenase small subunit; 4Fe-4S ferredoxin iron- sulfur binding domain protein; ferredoxin; KEGG: pca:Pcar_1633 NAD-reducing iron-only hydrogenase large subunit.
 0.999
Apre_1086
PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pca:Pcar_1844 NADP-reducing hydrogenase chain C.
 0.999
acpP
Phosphopantetheine-binding; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 0.987
Apre_1042
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: eca:ECA2957 pyruvate-flavodoxin oxidoreductase.
  
 0.983
Apre_1428
TIGRFAM: selenate reductase YgfK; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ecf:ECH74115_4168 putative selenate reductase.
  
 
 0.898
Apre_1582
Esterase/lipase-like protein; KEGG: bch:Bcen2424_0165 alpha/beta hydrolase domain-containing protein.
    
   0.858
Apre_1371
PFAM: hydrogenase large subunit domain protein; 4Fe- 4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0725 hydrogenase-like.
 
 
 0.839
Apre_0384
Hypothetical protein; KEGG: bcb:BCB4264_A0307 alpha/beta hydrolase.
   
   0.832
Apre_1234
PFAM: alpha/beta hydrolase fold; KEGG: bcr:BCAH187_A1976 hydrolase, alpha/beta fold family.
   
   0.832
Apre_1713
KEGG: asu:Asuc_1643 alpha/beta hydrolase fold.
   
   0.832
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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