STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_1099PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bcb:BCB4264_A2322 enoyl-CoA hydratase/isomerase family protein. (355 aa)    
Predicted Functional Partners:
Apre_1351
TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: mpo:Mpop_3667 acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.990
Apre_0081
PFAM: acyl-CoA dehydrogenase domain protein; Rubredoxin-type Fe(Cys)4 protein; Electron transfer flavoprotein alpha subunit; Acyl-CoA dehydrogenase type 2 domain; KEGG: bcb:BCB4264_A5464 acyl-CoA dehydrogenase.
 
 0.919
Apre_0505
PFAM: acyl-CoA dehydrogenase domain protein; Electron transfer flavoprotein alpha subunit; Acyl-CoA dehydrogenase type 2 domain; KEGG: bha:BH3798 acyl-CoA dehydrogenase.
 
 0.916
Apre_1102
TIGRFAM: aconitate hydratase; PFAM: aconitate hydratase domain protein; KEGG: dvl:Dvul_1930 aconitate hydratase.
  
 
 0.895
rpmG
TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; KEGG: pca:Pcar_0687 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
    
 
 0.856
Apre_1356
PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: bcb:BCB4264_A5464 acyl-CoA dehydrogenase.
 
 0.849
rpsI
PFAM: ribosomal protein S9; KEGG: bha:BH0169 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.842
rpsP
TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: bcy:Bcer98_2496 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
    
   0.841
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
    
 
 0.840
rpmJ
TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: rpl36; 50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
    
   0.840
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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