STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_1117PFAM: GCN5-related N-acetyltransferase; KEGG: slo:Shew_2550 GCN5-related N- acetyltransferase. (164 aa)    
Predicted Functional Partners:
Apre_0884
KEGG: ban:BA2233 hypothetical protein.
 
 
   0.615
Apre_1118
PFAM: NERD domain protein; DNA topoisomerase type IA zn finger domain protein; KEGG: sun:SUN_1494 hypothetical protein.
 
     0.612
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.553
Apre_0163
KEGG: conserved hypothetical protein; K10401 kinesin family member 18/19.
  
     0.549
Apre_1188
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sus:Acid_4487 ABC transporter related.
  
     0.498
Apre_1517
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hne:HNE_3089 ABC transporter, permease/ATP- binding protein.
  
     0.483
Apre_0324
Hypothetical protein; KEGG: AGAP002737-PA.
  
     0.450
Apre_0015
PFAM: extracellular solute-binding protein family 5; KEGG: bcr:BCAH187_A0266 extracellular solute- binding protein family 5.
  
     0.438
Apre_0167
Hypothetical protein.
  
     0.418
Apre_0226
Putative membrane protein.
  
     0.417
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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