STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_1134PFAM: protein of unknown function DUF633; KEGG: bat:BAS4192 hypothetical protein. (230 aa)    
Predicted Functional Partners:
Apre_1133
PFAM: protein of unknown function DUF34; KEGG: dal:Dalk_3075 protein of unknown function DUF34.
  
  
 0.919
sigA
RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
       0.796
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
       0.743
Apre_0937
PFAM: protein of unknown function DUF965; KEGG: bsu:BSU27400 hypothetical protein; Belongs to the UPF0297 family.
  
     0.741
Apre_1305
Putative helix-turn-helix protein YlxM/p13 family protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
  
     0.590
Apre_0208
PFAM: protein of unknown function DUF951; KEGG: ban:BA5725 hypothetical protein.
  
     0.587
Apre_0522
ATP-dependent nuclease subunit B-like protein; ATP-dependent DNA helicase.
 
     0.574
Apre_0523
UvrD/REP helicase; ATP-dependent DNA helicase.
 
     0.572
polC
DNA polymerase III, alpha subunit; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
 
     0.558
whiA
Protein of unknown function DUF199; Involved in cell division and chromosome segregation.
  
     0.518
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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