STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_1156KEGG: cff:CFF8240_1806 nitroimidazole resistance protein, putative. (164 aa)    
Predicted Functional Partners:
Apre_1154
PFAM: methyltransferase small; KEGG: bsu:BSU00340 hypothetical protein; Belongs to the methyltransferase superfamily.
 
     0.801
rsmI
Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.787
Apre_1153
PFAM: Aldehyde Dehydrogenase; KEGG: pca:Pcar_1701 aldehyde dehydrogenase, NAD- linked; Belongs to the aldehyde dehydrogenase family.
       0.452
Apre_0187
PFAM: peptidase S41; KEGG: similar to Interphotoreceptor retinoid- binding protein precursor (IRBP) (Interstitial retinol-binding protein).
  
     0.441
Apre_0787
PFAM: Mannosyl-glycoprotein endo-beta-N- acetylglucosamidase; SMART: Lysozyme subfamily 2; KEGG: bcy:Bcer98_3449 N-acetylmuramoyl-L-alanine amidase.
  
     0.439
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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