STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_1186TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; beta-lactamase domain protein; KEGG: bsu:BSU25570 putative integral membrane protein. (722 aa)    
Predicted Functional Partners:
Apre_1185
TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: gur:Gura_3132 DNA polymerase III, delta subunit.
 
   
 0.921
Apre_0759
KEGG: ott:OTT_1626 hypothetical protein.
 
  
 0.857
Apre_1290
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: gur:Gura_3690 DNA protecting protein DprA.
 
  
 0.816
Apre_0650
PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; KEGG: gsu:GSU2043 type 4 prepilin-like proteins leader peptide processing enzyme.
 
  
 0.808
Apre_0648
PFAM: type II secretion system protein; KEGG: mxa:MXAN_2512 general secretion pathway protein F.
 
  
 0.806
Apre_0934
KEGG: bsu:BSU25590 unspecific high-affinity DNA- binding protein; TIGRFAM: competence protein ComEA helix-hairpin- helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding class 1.
 
  
 0.691
Apre_0585
PFAM: type II secretion system protein E; SMART: AAA ATPase; KEGG: cko:CKO_02227 hypothetical protein.
  
  
 0.667
Apre_0653
Hypothetical protein.
  
  
 0.636
Apre_1674
PFAM: coagulation factor 5/8 type domain protein; KEGG: bcr:BCAH187_A2113 endo-alpha-N- acetylgalactosaminidase.
  
  
 0.636
cinA
TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: bsu:BSU16930 competence damage-inducible protein A; Belongs to the CinA family.
     
 0.629
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.