STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_1224Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: atc:AGR_C_4831 hypothetical protein. (151 aa)    
Predicted Functional Partners:
Apre_1223
PFAM: fructosamine kinase; aminoglycoside phosphotransferase; KEGG: fructosamine kinase.
       0.585
Apre_1227
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lpn:lpg1139 spermidine/putrescine ABC transporter permease protein PotC.
     
 0.469
Apre_1225
Putative protein of poly-gamma-glutamate biosynthesis (capsule formation); KEGG: cha:CHAB381_0623 capsule biosynthesis protein.
       0.465
Apre_1226
PFAM: extracellular solute-binding protein family 1; KEGG: eum:ECUMN_1301 polyamine transporter subunit; periplasmic-binding component of ABC superfamily.
       0.465
Apre_1228
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vvy:VV1686 spermidine/putrescine ABC transporter membrane protein.
       0.465
potA
ABC transporter related; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
       0.465
Apre_1220
PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: bxe:Bxe_B0141 DEAD/DEAH box helicase.
  
    0.409
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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