STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_1225Putative protein of poly-gamma-glutamate biosynthesis (capsule formation); KEGG: cha:CHAB381_0623 capsule biosynthesis protein. (418 aa)    
Predicted Functional Partners:
potA
ABC transporter related; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
       0.775
Apre_1226
PFAM: extracellular solute-binding protein family 1; KEGG: eum:ECUMN_1301 polyamine transporter subunit; periplasmic-binding component of ABC superfamily.
       0.773
Apre_1227
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lpn:lpg1139 spermidine/putrescine ABC transporter permease protein PotC.
       0.773
Apre_1228
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vvy:VV1686 spermidine/putrescine ABC transporter membrane protein.
       0.773
Apre_0155
Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.
  
    0.596
Apre_1230
PFAM: sodium:dicarboxylate symporter; KEGG: dde:Dde_0808 serine/threonine sodium symporter; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
       0.486
Apre_1231
PFAM: protein of unknown function DUF1063; KEGG: fph:Fphi_1065 hypothetical protein; Belongs to the UPF0597 family.
       0.486
Apre_1224
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: atc:AGR_C_4831 hypothetical protein.
       0.465
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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