Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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[Homology]
Score
Apre_1237PFAM: protein of unknown function DUF969; KEGG: vfm:VFMJ11_1453 permease. (221 aa)    
Predicted Functional Partners:
Apre_1236
PFAM: protein of unknown function DUF979; KEGG: bcy:Bcer98_2057 hypothetical protein.
 
     0.954
pcp
Pyrrolidone-carboxylate peptidase; Removes 5-oxoproline from various penultimate amino acid residues except L-proline; Belongs to the peptidase C15 family.
 
     0.947
Apre_1238
PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: saz:Sama_2184 phage shock protein E.
       0.541
Apre_1234
PFAM: alpha/beta hydrolase fold; KEGG: bcr:BCAH187_A1976 hydrolase, alpha/beta fold family.
       0.443
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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