STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_1252TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; KEGG: bcb:BCB4264_A0474 YihY family protein; Belongs to the UPF0761 family. (324 aa)    
Predicted Functional Partners:
Apre_1251
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: bsu:BSU32230 hypothetical protein.
  
    0.802
Apre_1253
TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: bca:BCE_4345 5-formyltetrahydrofolate cyclo- ligase family protein; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
       0.783
Apre_1250
TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: bha:BH3608 ribosomal protein S30AE familyprotein.
       0.526
Apre_1701
PFAM: RDD domain containing protein; KEGG: bsu:BSU29520 hypothetical protein.
 
     0.502
Apre_0886
SMART: RNA binding S1 domain protein; KEGG: mmw:Mmwyl1_2031 RNA-binding S1 domain-containing protein; Belongs to the CvfB family.
  
     0.414
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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