STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_1267PFAM: glycosyl transferase group 1; KEGG: bce:BC5269 amylovoran biosynthesis AmsK. (411 aa)    
Predicted Functional Partners:
Apre_1269
PFAM: sugar transferase; KEGG: bce:BC5270 undecaprenyl-phosphate galactosephosphotransferase.
 
  
 0.854
Apre_1266
KEGG: bce:BC5268 secreted polysaccharide polymerase.
  
  
 0.818
Apre_1271
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: bce:BC5273 UDP-bacillosamine synthetase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.792
Apre_1268
PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; ATP-dependent carboxylate- amine ligase domain protein ATP-grasp; KEGG: shm:Shewmr7_1388 protein of unknown function DUF201.
 
  
 0.760
Apre_1272
PFAM: polysaccharide biosynthesis protein CapD; 3- beta hydroxysteroid dehydrogenase/isomerase; short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: gme:Gmet_1338 polysaccharide biosynthesis protein CapD.
  
  
 0.744
Apre_1270
PFAM: protein of unknown function DUF201; phosphoribosylglycinamide synthetase; KEGG: sbp:Sbal223_1401 protein of unknown function DUF201.
  
  
 0.705
murJ
Integral membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.
       0.669
Apre_1256
Transcriptional regulator, XRE family; KEGG: abu:Abu_0659 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
  
  
 0.560
Apre_0205
KEGG: dal:Dalk_0889 1,4-alpha-glucan branching enzyme; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase all-beta; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.
   
 0.522
Apre_0788
KEGG: ftn:FTN_0513 glycogen branching enzyme; PFAM: glycoside hydrolase family 13 domain protein; SMART: alpha amylase catalytic sub domain.
   
 0.522
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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