Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Apre_1271PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: bce:BC5273 UDP-bacillosamine synthetase; Belongs to the DegT/DnrJ/EryC1 family. (400 aa)    
Predicted Functional Partners:
Apre_1272
PFAM: polysaccharide biosynthesis protein CapD; 3- beta hydroxysteroid dehydrogenase/isomerase; short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: gme:Gmet_1338 polysaccharide biosynthesis protein CapD.
 
  
 0.988
Apre_1269
PFAM: sugar transferase; KEGG: bce:BC5270 undecaprenyl-phosphate galactosephosphotransferase.
 
  
 0.899
Apre_1270
PFAM: protein of unknown function DUF201; phosphoribosylglycinamide synthetase; KEGG: sbp:Sbal223_1401 protein of unknown function DUF201.
 
  
 0.877
Apre_1268
PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; ATP-dependent carboxylate- amine ligase domain protein ATP-grasp; KEGG: shm:Shewmr7_1388 protein of unknown function DUF201.
 
  
 0.842
murJ
Integral membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.
       0.787
Apre_1267
PFAM: glycosyl transferase group 1; KEGG: bce:BC5269 amylovoran biosynthesis AmsK.
 
  
 0.785
Apre_1515
KEGG: lip:LI0123 maltose O-acetyltransferase.
  
  
 0.749
Apre_1673
KEGG: dal:Dalk_1694 hypothetical protein.
  
  
 0.725
Apre_1266
KEGG: bce:BC5268 secreted polysaccharide polymerase.
  
    0.714
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
  
 0.572
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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