STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_1285Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: bcr:BCAH187_A4208 serine-type D-Ala-D-Ala carboxypeptidase DacF; Belongs to the peptidase S11 family. (403 aa)    
Predicted Functional Partners:
Apre_1213
PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: rle:RL1743 putative peptidoglycan transglycosylase penicillin-binding protein 1A.
 
 
 0.935
Apre_0139
PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: bcy:Bcer98_1193 serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.
 
  
 
0.930
Apre_0495
PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: bsu:BSU19620 hypothetical protein.
    
 0.912
Apre_1543
PFAM: beta-lactamase; KEGG: eum:ECUMN_2751 D-lactyl ether N-acetylmuramic- 6-phosphate acid etherase; beta-lactamase family.
     
 0.909
Apre_1286
Hypothetical protein; KEGG: bsu:BSU26790 aminoglycoside 6- adenylyltransferase.
       0.801
Apre_1287
PFAM: NUDIX hydrolase; KEGG: abu:Abu_1635 phosphohydrolase (MutT/NUDIX family protein).
       0.782
Apre_0876
Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; KEGG: gur:Gura_2858 peptidoglycan glycosyltransferase.
  
 
 0.646
mscL
Large conductance mechanosensitive channel protein; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.
       0.560
tig
Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.
  
    0.405
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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