Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Apre_1307PFAM: ABC-2 type transporter; KEGG: cff:CFF8240_0262 ABC-type multidrug transport system permease component. (371 aa)    
Predicted Functional Partners:
Apre_1309
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcb:BCB4264_A1804 ABC transporter, ATP- binding protein.
 
  
 0.975
Apre_1308
Hypothetical protein; KEGG: bcb:BCB4264_A1805 ABC transporter, permease protein.
 
     0.954
Apre_0445
PFAM: nitroreductase; KEGG: cak:Caul_4232 nitroreductase.
  
  
 0.737
Apre_0996
PFAM: nitroreductase; KEGG: esa:ESA_02486 nitroreductase A; Belongs to the flavin oxidoreductase frp family.
  
  
 0.737
Apre_1049
KEGG: ecf:ECH74115_1558 hypothetical protein.
  
  
 0.650
Apre_0192
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH0652 ABC transporter ATP-binding protein.
 
  
 0.602
Apre_0774
PFAM: protein of unknown function DUF214; KEGG: lpc:LPC_0234 hypothetical protein.
 
  
 0.591
Apre_0407
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcb:BCB4264_A3341 ABC transporter, ATP- binding protein.
 
  
 0.563
Apre_0170
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hpj:jhp1141 putative ABC transporter, ATP- binding protein.
  
  
 0.520
Apre_1480
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcy:Bcer98_1078 ABC transporter-related protein.
  
  
 0.520
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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