STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_1313Ribonuclease G and E-like protein; KEGG: bcy:Bcer98_3160 ribonuclease. (307 aa)    
Predicted Functional Partners:
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
 
 0.932
Apre_0672
Conserved hypothetical protein; Displays ATPase and GTPase activities.
 
 
 
 0.877
eno
Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
   
 
 0.875
Apre_1315
PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: pca:Pcar_1046 cell division protein FtsI.
 
    0.855
Apre_1083
PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: bha:BH2384 ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.
   
 
 0.849
Apre_1317
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
 
     0.826
Apre_1314
Hypothetical protein.
   
   0.823
Apre_1316
Hypothetical protein; KEGG: bha:BH3029 cell-shape determining protein.
 
     0.819
Apre_1318
PFAM: cell shape determining protein MreB/Mrl; KEGG: pca:Pcar_1049 rod shape-determining protein MreB.
       0.792
Apre_1319
TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; KEGG: glo:Glov_0523 DNA repair protein RadC; Belongs to the UPF0758 family.
       0.782
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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